• 03/2025 - 02/2028 AIMS Project website
• 2024 - 2026 MESID: MEmilio - Software tools for the modular spatio-temporal modeling and simulation of infectious disease dynamics Project website
• 05/2022 - 04/2025 INtegrative modeling of the spread of Serious Infectious Diseases (INSIDe) Project website
• 06/2022 - 12/2025 Local Control System for Epidemic Outbreaks (LOKI-Pandemics) Project website
• 10/2021 - 12/2024 PANDEmic MObility Scenarios: Optimizing traffic flows in times of a pandemic (PANDEMOS) Project website

• MEmilio: A high performance Modular EpideMIcs simuLatIOn software (C++ & MPI, Python)
  Repository: https://github.com/SciCompMod/memilio
  Release Version 2.0.0: https://doi.org/10.5281/zenodo.15168968
   
• GMGPolar: High Order Geometric Multigrid for planes in curvilinear coordinates (C/C++ & OpenMP, Python)
  Repository: https://github.com/mknaranja/GMGPolar
  Release Version 2.0.1 https://doi.org/10.5281/zenodo.15732483
   
• ESID: Epidemiological Scenarios for Infectious Diseases (Typescript, Python)
  Repository: https://github.com/SciCompMod/ESID
   

• ORC ID: https://orcid.org/0000-0002-0906-6984
• Google Scholar: https://scholar.google.de/citations?user=OyOv8EAAAAAJ&hl=de&oi=ao
• Scopus: https://www.scopus.com/authid/detail.uri?authorId=57191842081
• Github: https://github.com/mknaranja

• J. Litz, P. Leleux, C. Kruse, J. Gedicke, M. J. Kühn Memory- and compute-optimized geometric multigrid GMGPolar for curvilinear coordinate representations -- Applications to fusion plasma (2025). Preprint.
   
• L. Plötzke, A. Wendler, R. Schmieding, M. J. Kühn Revisiting the Linear Chain Trick in epidemiological models: Implications of underlying assumptions for numerical solutions (2024). Preprint
   
• A. Schmidt, H. Zunker, A. Heinlein, M. J. Kühn Graph Neural Network Surrogates to leverage Mechanistic Expert Knowledge towards Reliable and Immediate Pandemic Response (2025). Preprint
   

• A. Wendler, L. Plötzke, H. Tritzschak, M. J. Kühn A nonstandard numerical scheme for a novel SECIR integro-differential equation-based model allowing nonexponentially distributed stay times (2024). Preprint
   

2025

• H. Zunker, P. Dönges, P. Lenz, S. Contreras, M. J. Kühn Risk-mediated dynamic regulation of effective contacts de-synchronizes outbreaks in metapopulation epidemic models. Chaos, Solitons & Fractals 199(2) : 116782 (2025). Preprint https://doi.org/10.1016/j.chaos.2025.116782
   
• P. Leleux, C. Schwarz, M. J. Kühn, C. Kruse, and U. Rüde Complexity analysis and scalability of a matrix-free extrapolated geometric multigrid solver for curvilinear coordinates representations from fusion plasma applications. Journal of Parallel and Distributed Computing 205 : 105143 (2025).Preprint. https://doi.org/10.1016/j.jpdc.2025.105143
   
• N. Schmid, J. Bicker, A. F. Hofmann, K. Wallrafen-Sam, D. Kerkmann, A. Wieser, M. J. Kühn, J. Hasenauer Integrative Modeling of the Spread of Serious Infectious Diseases and Corresponding Wastewater Dynamics. Epidemics, 51 (2025): 100836. Preprint Link
   
• D. Kerkmann, S. Korf, K. Nguyen, D. Abele, A. Schengen, C. Gerstein, J. H. Göbbert, A. Basermann, M. J. Kühn, M. Meyer-Hermann Agent-based modeling for realistic reproduction of human mobility and contact behavior to evaluate test and isolation strategies in epidemic infectious disease spread. Computers in Biology and Medicine 193 (2025): 110269. Preprint. Link
   
• D. Diallo, J. Schoenfeld, R. Schmieding, S. Korf M. J. Kühn, T. Hecking Integrating Human Mobility Models with Epidemic Modeling: A Framework for Generating Synthetic Temporal Contact Networks. Entropy, 27(5), 507 (2025). Preprint Link
   
• J. Bicker, R. Schmieding, M. Meyer-Hermann, M. J. Kühn Hybrid metapopulation agent-based epidemiological models for efficient insight on the individual scale: a contribution to green computing. Infectious Disease Modelling, 10(2), 571 (2025). Link Preprint
   

2024

• H. Zunker, R. Schmieding, D. Kerkmann, A. Schengen, S. Diexer, R. Mikolajczyk, M. Meyer-Hermann, M. J. Kühn Novel travel time aware metapopulation models and multi-layer waning immunity to assess late-phase epidemic and endemic scenarios. PLOS Computational Biology 20(12): e1012630 (2024). Link Preprint
   
• S. Memon, J. F. Jadebeck, M. Osthege, A. Wendler, D. Kerkmann, H. Zunker, J. H. Göbbert, W. Wiechert, K. Nöh, M. Riedel, M. J. Kühn Automated Processing of Pipelines Managing Now- and Forecasting of Infectious Diseases (2024). 47th MIPRO ICT and Electronics Convention (MIPRO), Opatija, Croatia, 2024, pp. 1157-1162, Accepted Version Link.
   
• J. L. Malkus, M. L. Díaz, A. Schengen, T. Mocanu, M. J. Kühn An OpenStreetMap-based approach for generating capacity-restricted POIs for activity-based travel demand modeling. Procedia Computer Science (2024), 238:420-427, Link.
   

2023

• P. Kaur Betz, J. Stoll , V. Grappendorf, J. Gilg, M. Zeumer , M. Klitz, L. Spataro, A. Klein, L. Rothenhäusler, H. Bohnacker, H. Krämer M. Meyer-Hermann, S. Somogyi, A. Gerndt and M. J. Kühn ESID: Exploring the Design and Development of a Visual Analytics Tool for Epidemiological Emergencies. IEEE VIS Workshop on Visualization for Pandemic and Emergency Responses (Vis4PandEmRes) (2023). Link. Preprint
   
• E. Bourne, P. Leleux, K. Kormann, C. Kruse, V. Grandgirard, Yaman Güclü, M. J. Kühn, U. Rüde, E. Sonnendrücker, E. Zoni Solver comparison for Poisson-like equations on tokamak geometries. Journal of Computational Physics (2023): 112249. Link Preprint
   
• M. J. Kühn, J. Holke, A. Lutz, J. Thies, M. Röhrig-Zöllner, A. Bleh, J. Backhaus, A. Basermann. SIMD vectorization for simultaneous solution of locally varying linear systems with multiple right hand sides. The Journal of Supercomputing (2023): 1-23. DOI: 10.1007/s11227-023-05220-4 Preprint Link
   

2022

• W. Koslow, M. J. Kühn, S. Binder, M. Klitz, D. Abele, A. Basermann, M. Meyer-Hermann, Appropriate relaxation of non-pharmaceutical interventions minimizes the risk of a resurgence in SARS-CoV-2 infections in spite of the Delta variant. PLoS Computational Biology 18, no. 5 (2022): e1010054. Link Preprint
   
• M. J. Kühn, D. Abele, S. Binder, K. Rack, M. Klitz, J. Kleinert, J. Gilg, L. Spataro, W. Koslow, M. Siggel, M. Meyer-Hermann, A. Basermann. Regional opening strategies with commuter testing and containment of new SARS-CoV-2 variants. BMC Infectious Diseases 22, no. 1 (2022): 333. Link Preprint.
   
• M. J. Kühn, C. Kruse, U. Rüde. Implicitly extrapolated geometric multigrid on disk-like domains for the gyrokinetic Poisson equation from fusion plasma applications. Journal of Scientific Computing 91, no. 1 (2022): 28. Link Preprint Errata
   

2021

• M. J. Kühn, D. Abele, T. Mitra, W. Koslow, M. Abedi, K. Rack, M. Siggel, S. Khailaie, M. Klitz, S. Binder, Luca Spataro, J. Gilg, J. Kleinert, M. Häberle, L. Plötzke, C. D. Spinner, M. Stecher, X. X. Zhu, A. Basermann, M. Meyer-Hermann, Assessment of effective mitigation and prediction of the spread of SARS-CoV-2 in Germany using demographic information and spatial resolution. Mathematical Biosciences 339 (2021): 108648. Link Preprint.
   
• M. J. Kühn, C. Kruse, U. Rüde, Energy-Minimizing, Symmetric Discretizations for Anisotropic Meshes and Energy Functional Extrapolation. SIAM Journal on Scientific Computing 43, no. 4 (2021): A2448-A2473. Preprint Download accepted version Link Errata
   

2020

• A. Klawonn, M. Kühn, O. Rheinbach, "Coarse spaces for FETI-DP and BDDC Methods for heterogeneous problems: Connections of Deflation and a Generalized Transformation-of-Basis Approach". Electronic Transactions on Numerical Analysis 52 (2020): 43-76. Preprint Download.
   
• A. Klawonn, M. J. Kühn, O. Rheinbach, "Parallel adaptive FETI-DP using lightweight asynchronous dynamic load balancing". International Journal for Numerical Methods in Engineering, 2020. Preprint. Link.

2018

• A. Klawonn, M. Kühn, O. Rheinbach,"Adaptive FETI-DP and BDDC methods with a Generalized Transformation of Basis for Heterogeneous Problems". Electronic Transactions on Numerical Analysis (ETNA), Vol. 49, pp. 1-27, 2018. Preprint. Download.
   
• A. Klawonn, M. J. Kühn, O. Rheinbach, "A closer look at local eigenvalue solvers for adaptive FETI-DP and BDDC". Proceedings of the 25th International Conference on Domain Decomposition Methods, DD XXV, St. John's NL, July, 23-27, 2018. Preprint Link.
   
• A. Heinlein, A. Klawonn, M. J. Kühn, "Local spectra of adaptive domain decomposition methods". Proceedings of the 25th International Conference on Domain Decomposition Methods, DD XXV, St. John's NL, July, 23-27, 2018. Preprint Link.
   

2017

• A. Klawonn, M. Kühn, O. Rheinbach, "Adaptive Coarse Spaces for FETI-DP in Three Dimensions with Applications to Heterogeneous Diffusion Problems", Proceedings of the International Conference on Domain Decomposition Methods 23. Springer Lecture Notes on Computational Science and Engineering, vol. 116, March 2017, pp 187-196. Download accepted version. Link.
   
• A. Klawonn, M. Kühn, O. Rheinbach, "Preconditioning of Iterative Eigenvalue Problem Solvers in Adaptive FETI-DP". In: Bjørstad P. et al. (eds) Domain Decomposition Methods in Science and Engineering XXIV. DD 2017. Lecture Notes in Computational Science and Engineering, vol 125, pp 415-423. Springer, Cham. Link.
   

2016

• A. Klawonn, M. Kühn, O. Rheinbach, "Adaptive Coarse Spaces for FETI-DP in Three Dimensions", SIAM J. Sci. Comput., Vol. 38(5), pp. A2880–A2911. Preprint. Download accepted version. Link.
   
• A. Klawonn, M. Kühn, O. Rheinbach, "Using Local Spectral Information in Domain Decomposition Methods - A Brief Overview in a Nutshell",  Proc. Appl. Math. Mech., 16: 729–730 (2016). Download accepted version. Link.
   

• Martin J. Kühn, "Adaptive FETI-DP and BDDC methods for highly heterogeneous elliptic finite element problems in three dimensions", Dissertation, Universität zu Köln (2018). Link to Dissertation. Link to Errata.

• 2022-2025 Mathematical Modeling of Infectious Diseases, University of Bonn, Bonn, Germany
   
• 2019 Iterative Methods in Linear Algebra, INP-ENSEEIHT (Institut National Polytechnique de Toulouse – École Nationale Supérieure d'Électrotechnique, d'Électronique, d'Informatique, d'Hydraulique et des Télécommunications), Toulouse, France
   
• 2018 Practical course on modeling and simulation of application problems from industry, economy and research: AI, Deep learning and CFD, University of Cologne, Cologne, Germany

• 10/2015 - 12/2018 Mathematics (and programming) for refugees, University of Cologne
  • Conception, design, and start on voluntary basis in 2015
  • BMBF (Federal Ministry of Education and Research) / DAAD prize winner 2019: Video